| Faculty/Adviser | Research Themes |
|---|---|
| Alan Mitchell Durham | Compiler Development, Bioinformatics, Programming Language Implementation, Software Engineering, Mobile Computing |
| Alessandra Alaniz Macedo | Information Extraction, Biomedical Informatics, Ubiquitous Computing |
| Aline Maria da Silva | Regulation and Function of serine/threonine proteins, phosphatases in microorganisms, Mechanisms of pathogenicity of Xylella fastidiosa. |
| Anatoly Yambartsev | Network Modeling in Systems Biology |
| André Fujita | Bioinformatics, Microarrays, Regulatory Networks |
| Angela Kaysel Cruz | Leishmania genome project; structural aspects of genome organization; construction of physical maps, analysis of cDNA libraries. |
| Ariane Machado Lima | Bioinformatics; Computational identification of non-coding RNAs; Formal languages |
| Arthur Gruber | Biologia Molecular de Microorganismos, Biologia molecular de coccídias, Desenvolvimento de aplicativos de Bioinformática. |
| Carlos Alberto de Braganca Pereira | Bayesian Inference in Engineering, Bayesian Inference |
| Carlos Alberto Labate | Genetic transformation of Eucalyptus, Bioinformatics applied to genomics and proteomics, Functional Genomics and Proteomics with emphasis on gene expression regulation, wood formation, rust resistance and water stress resistance in Eucalyptus plants. |
| Carlos Frederico Martins Menck | DNA Repair Studies and their Biological Consequences |
| Clever Ricardo Guareis de Farias | Component-based software analysis and design methods, Component-based groupware systems development, Distributed systems design and development, Conceptual modeling, Context-aware systems model-based development. |
| Eduardo Moraes Rego Reis | Integrated analysis of human tumor genomic data. |
| Fabricio Martins Lopes | Bioinformatics, Pattern Recognition, Computer Vision. |
| Fernando Luis Barroso da Silva | Molecular Modeling, Structural Bioinformatics, Fundamental Interactions in Molecular Biophysics. |
| Glaucia Mendes Souza | Transition signal transduction, Growth/development, Sugarcane Signal Transduction (SUCAST), Sugarcane Transcriptome. |
| Helaine Carrer | Biotechnology and Molecular Biology of Organelles, Molecular Biology of Plant-Microorganism Interaction, Genomics and Bioinformatics. |
| Helder Takashi Imoto Nakaya | Systems Biology of Long Noncoding RNAs, Systems Immunology |
| Helena Paula Brentani | Gene expression, genomics, Microarray, Bioinformatics, Cancer, Psychiatry, early diagnosis of neurodevelopmental disorders |
| João Carlos Setubal | Development of new bioinformatics tools (suitable for students with a computer science background or good programming experience), and computational analysis of biological data, usually genomics or transcriptomics (suitable for students with a bioscience background) |
| João Eduardo Ferreira | Database, Database for knowledge extraction, Information Systems Integration, Database modeling. |
| João Marcelo Pereira Alves | Phylogeny (traditional and phylogenomics), Genome evolution, Bioinformatics, Human Metagenomics, Transcriptomics of unicellular eukaryotes and bacteria by second generation sequencing, Genomics of unicellular eukaryotes and bacteria. |
| Julia Maria Pavan Soler | Genetic Mapping of Complex Diseases, Genetic mapping of cardiovascular risk factors, Application and development of Statistical Methods in the Analysis of Genetic and Genomic Data |
| Junior Barrera | Applications of Mathematical Morphology in Image Analysis, Development of computational systems for image analysis, Theoretical research on Mathematical Morphology, Identification of gene regulatory networks, Application of morphological operator design to real image analysis problems, Modeling of multi-agent systems, Theoretical research on morphological operator design by computational learning. |
| Kelly Rosa Braghetto | Database, Distributed Systems, Bioinformatics |
| Koichi Sameshima | Study of the mechanisms of temporal information processing in sensory systems: electrophysiological, psychophysical and computational approaches; Psychophysical and neuropsychological approaches applied to the study of sensory systems and cognitive assessment in humans, Functional neuroimaging. |
| Luciano Antonio Digiampietri | Web 2.0 and Semantic Web, Games in Education, Business Process Management/Scientific Workflows, Database Optimization, Genome Assembly and Annotation, Social Network Analysis and Scientometrics. |
| Luciano da Fontoura Costa | Image Processing and Analysis, Modeling and Simulation of Neural Systems, Bioinformatics, Computational Biology. |
| Luiz Antonio Baccala | Blind Channel Equalization, Causality among Muiltivariate Time Series, Neural Connectivity. |
| Marcos Silveira Buckeridge | Plant Cell Wall Structure and Metabolism, Plant Responses to Global Climate Change, Ecophysiology of Native Plants, Plant Carbohydrate Biochemistry and Biotechnology. |
| Odemir Martinez Bruno | Computer Vision, Parallel Computing, Image Analysis and Processing, Artificial Vision, Pattern Recognition. |
| Paolo Marinho de Andrade Zanotto | Molecular Biology of Baculoviruses, Insect Tissue Culture, Large-scale viral DNA sequencing, Molecular Virology, Viral gene expression studies by realtime PCR and RLM-RACE, DNA cloning, Cell culture for viral replication, Viral detection by PCR. |
| Paulo Inácio de Knegt López de Prado | Insect-plant interaction ecology, Community ecology, Biodiversity diagnosis, Interdisciplinary environmental research, Multivariate analysis of environmental data, Biodiversity and conservation, Community ecology, Theory and quantification of biological diversity, Insect-plant interactions, Ecology and human societies, Theoretical ecology. |
| Paulo Sérgio Lopes de Oliveira | Development of computational tools for genome analysis, Modeling of transcriptome databases, Computational approach to genetic problems associated with the cardiovascular system, Gene expression analysis, Gene regulation analysis using homology molecular modeling and molecular dynamics, Alternative splicing and protein function: An approach through protein structures, Functional analysis of mutations through computational approach to protein structures, Selection of genetic markers of commercial interest in cattle. |
| Pedro Alexandre Favoretto Galante | Bioinformatics, Molecular Biology, Human and Medical Genetics, Molecular and Microorganism Genetics. |
| Ricardo Zorzetto Nicoliello Vencio | Applied Probability and Statistics, Computational Biology, Bioinformatics, Data Analysis. |
| Roberto Marcondes Cesar Junior | Pattern Recognition, Network Modeling, Computer Vision, Image Analysis, Bioinformatics |
| Ronaldo Fumio Hashimoto | Image Processing, Pattern Recognition, Mathematical Morphology, Bioinformatics, Probabilistic Boolean Networks, Boolean Networks. |
| Sergio Russo Matioli | Evolutionary Genetics, Quantitative Genetics |
| Sergio Verjovski-Almeida | Differential gene expression in cancer, Large scale gene expression in Schistosoma mansoni – effect of hormones. |
| Taran Grant | Amphibian Systematics, Phylogenetic Inference, Neotropical Herpetology. |
| Tie Koide | Systemic Biology of microorganisms. The Laboratory of Systemic Biology of Microorganisms (LaBiSisMi) has the mission to contribute to the understanding of microorganisms, understood as an integrated dynamical system, searching for quantitative multi-scale models to understand their behavior, guided by Experimental Molecular Biology in synergy with Mathematics/Computing. Currently, we are working with the study of an extremophilic archaea and the influence of non-coding RNAs on global gene regulation. |