QR-code of ORCID Leandro de Araújo Lima
< leandro.lima Θ gladstone.ucsf.edu >
< llima Θ ime.usp.br >

Current position

Bioinformatics Software Engineer at Gladstone Institutes / UCSF - Dr. Finkbeiner's Lab, in collaboration with Sirota Lab
Bioinformatics consultant: Genomics (exome and whole genome analysis, CNV analysis), transcriptomics (microarray and RNA-Seq data), pathway and network analysis


Ph.D. in Bioinformatics (2011-2015) at Inter-institutional Grad Program on Bioinformatics - University of São Paulo (USP)
Pre Doctoral Fellow (2014-2015) at Children's Hospital of Philadelphia (Center for Applied Genomics)
M.Sc. in Computer Science (2007-2009) at Institute of Mathematics and Statistics (IME) - University of São Paulo (USP)
B.Sc. in Computer Science (2003-2006) at Department of Computer Science - Federal University of Ceará (UFC)

Main interests

- Bioinformatics, genetics of psychiatric disorders, complex networks, protein-protein interaction (PPI) networks, genome-wide association studies (GWAS) analysis, copy-number variation (CNV) analysis, exome analysis, Next Generation Sequencing, Data Visualization

Programming languages and other skills

- Python, R, Java, C, Javascript, Shell script, PHP, Perl, MySQL, Linux
- Bioinformatics tools: bwa, samtools, bedtools, vcftools, XHMM, IGV, Bioconductor, Biopython, MultiExperiment Viewer (MeV), Cytoscape/CytoscapeWeb, Plink, CLC Genomics Workbench
- Linux/Unix systems, high performance parallel computing environment, Hadoop

Some projects

- Doctorate degree dissertation (in Portuguese): Link Teses USP
- Masters degree dissertation (in Portuguese): Last version, slides and some figures
- Drug-targets interactome (beta): a web tool to visualize drug-targets and protein-protein interaction databases
- GENS (GWAS Edge-based Network Search): a gene network-based pathway analysis tool for GWAS data

Curriculum Lattes (Portuguese)

Some slides
Google Scholar ResearchGate
Rosalind BioStar Twitter WyzAnt tutoring GitHub

Blogs (in Portuguese):
Estudar Computação (Studying Computer Science) and
Estude outras línguas (Study other languages).

Last update: March 14, 2017