Main Research Areas

Feature Selection, Coefficient of Determination, Boolean Networks, Probabilistic Boolean Networks, Intrinsically Multivariately Predictive Genes

Members

• Ronaldo Fumio Hashimoto - Advisor
• João Henrique Burckas Ribeiro - PhD Student
• Sandro Pereira Vilela - PhD Student
• Carlos Henrique Aguena Higa - MSc Student
  

Projects

• Probabilistic Boolean Networks and Bioinformatics (from September 2003 to September 2005)
  sponsored by CNPq (Edital Universal 01/2002 - Proc 473154/3-0)
• Coefficient of Determination, Probabilistic Boolean Networks and Gene Regulation (September 2004 - September 2006)
  sponsored by FAPESP (Proc 04/01143-0)

Colaborators

• Edward R. Dougherty (Texas A & M University)
• Michael L. Bittner ( Translational Genomics Research Institute)

• ICOBICOBI 2003 (First International Conference on Bioinformatics and Computational Biology)
  was held from May 14 to 16, in Riberão Preto, São Paulo, Brazil.
• Workshop on Discrete Models for Genetic Regulatory Networks ( Program )
  was held on November 5 and 6, 2003, in College Station, Texas, USA.
• First International Workshop on Probabilistic Boolean Network in Genomic Signal Processing.
  was held on February 20 and 21, 2002, in Bethesda, Maryland, National Human Genome Research Institute (NHGRI).
• XIX Reunião Anual da Federação de Sociedades de Biologia Experimental
  was held from August 25 to 28 in Águas de Lindóia, São Paulo, Brazil.

• HASHIMOTO, Ronaldo Fumio, KIM, Seungchan, SHMULEVICH, Ilya, ZHANG, Wei, BITTNER, Michael L., and, DOUGHERTY, Edward R. Growing Genetic Regulatory Networks from Seed Genes   Bioinformatics. 20(8):1241-1247, May, 2004 Abstract
• BRAGA-NETO, Ulisses, HASHIMOTO, Ronaldo Fumio, DOUGHERTY, Edward R., NGUYEN, Danh V., CARROLL, Raymond J. Is Cross-Validation Better than Resubstituion for Ranking Genes?   Bioinformatics. 20(2)253-258, January, 2004 Abstract
• SHMULEVICH, Ilya, GLUHOVSKY, Ilya, HASHIMOTO, Ronaldo Fumio, DOUGHERTY, Edward R., ZHANG, Wei. Steady-State Analysis of Genetic Regulatory Networks Modelled by Probabilistic Boolean Networks.   Comparative and Functional Genomics. 4:601-608, December, 2003 Abstract
• HASHIMOTO, Ronaldo Fumio, DOUGHERTY, Edward R., BRUN, Marcel, ZHOU, Zheng-Zheng, BITTNER, Michael L., Trent, Jeffrey M. Efficient Selection of Feature Sets Possessing High Coefficients of Determination Based on Incremental Determinations.  Signal Processing , 83(4):695-712, April, 2003. Abstract

• Probabilistic Boolean Networks (comprehensive source of information; maintained by Ilya Shmulevich)
• Genomic Signal Processing Laboratory
  

	E-mail: ronaldo at ime dot usp dot br
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